mangadap package

Subpackages

• mangadap.config package
  • Submodules
    • mangadap.config.analysisplan module
      • AnalysisPlan
    • mangadap.config.defaults module
      • dap_config_root()
      • dap_data_root()
      • dap_source_dir()
      • sdss_maskbits_file()
    • mangadap.config.manga module
      • MaNGAAnalysisPlan
      • MaNGAConfig
      • dap_analysis_path()
      • dap_config()
      • dap_version()
      • dapall_file()
      • drp_directory_path()
      • drp_finding_chart_path()
      • drp_redux_path()
      • drp_version()
      • drpall_file()
      • manga_fits_root()
      • parse_plate_ifu_from_file()
      • photometry_fix_file()
      • plate_target_files()
      • redshift_fix_file()
  • Module contents
    • get_manga_environ()
    • get_python_versions()
• mangadap.contrib package
  • Submodules
    • mangadap.contrib.LambdaR_2D_forMaNGA module
      • Circle_Zone
      • Derive_LR_VS_Profiles()
      • Get_CornersArray()
      • Rectangle_Zone
      • Rotate_Corners()
      • Selection_Zone
      • SymmetrizeField()
      • XY_toSemiMajor()
      • check_cross_pixel()
      • derive_unbinned_field()
      • dist2()
      • find_centereven()
      • find_centerodd()
      • guess_regular_grid()
      • interp_value_fromR()
      • rotPA()
      • select_spaxels()
    • mangadap.contrib.xjmc module
      • _combine_stellar_templates()
      • _fit_iteration()
      • _good_templates()
      • _ppxf_component_setup()
      • _reorder_solution()
      • _reset_components()
      • _reset_kinematic_constraints()
      • _set_to_using_optimal_templates()
      • _validate_templates_components()
      • calculate_noise()
      • emline_fitter_with_ppxf()
      • ppxf_tied_parameters()
      • ppxf_vsyst()
  • Module contents
• mangadap.datacube package
  • Submodules
    • mangadap.datacube.datacube module
      • DataCube
    • mangadap.datacube.manga module
      • MaNGADataCube
  • Module contents
• mangadap.par package
  • Submodules
    • mangadap.par.absorptionindexdb module
      • Class usage examples
      • AbsorptionIndexDB
    • mangadap.par.artifactdb module
      • ArtifactDB
      • ArtifactPar
    • mangadap.par.bandheadindexdb module
      • Class usage examples
      • BandheadIndexDB
    • mangadap.par.emissionlinedb module
      • Class usage examples
      • EmissionLineDB
      • EmissionLineDefinitionTable
      • EmissionLinePar
    • mangadap.par.emissionmomentsdb module
      • Class usage examples
      • EmissionMomentsDB
      • EmissionMomentsDefinitionTable
    • mangadap.par.parset module
      • ParSet base class
      • KeywordParSet class
      • KeywordParSet
      • ParDatabase
      • ParSet
    • mangadap.par.spectralfeaturedb module
      • SpectralFeatureDB
    • mangadap.par.util module
      • _eval_ignore()
      • get_parset_list()
      • recursive_dict_evaluate()
      • recursive_dict_str_to_None()
  • Module contents
• mangadap.proc package
  • Submodules
    • mangadap.proc.bandpassfilter module
      • Class usage examples
      • BandPassFilterPar
      • emission_line_equivalent_width()
      • passband_integral()
      • passband_integrated_mean()
      • passband_integrated_width()
      • passband_median()
      • passband_weighted_mean()
      • passband_weighted_sdev()
      • pixel_fraction_in_passband()
      • pseudocontinuum()
    • mangadap.proc.elric module
      • Elric
      • ElricFittingWindow
      • ElricPar
      • LineProfileFit
      • TiedLineProfile
    • mangadap.proc.emissionlinemodel module
      • EmissionLineModel
      • EmissionLineModelBitMask
      • EmissionLineModelDef
    • mangadap.proc.emissionlinemoments module
      • EmissionLineMoments
      • EmissionLineMomentsBitMask
      • EmissionLineMomentsDataTable
      • EmissionLineMomentsDef
    • mangadap.proc.emissionlinetemplates module
      • Class usage examples
      • EmissionLineTemplates
    • mangadap.proc.ppxffit module
      • PPXFFit
      • PPXFFitPar
      • PPXFFitResult
      • PPXFModel
    • mangadap.proc.reductionassessments module
      • ReductionAssessment
      • ReductionAssessmentDataTable
      • ReductionAssessmentDef
    • mangadap.proc.rukia module
      • LegendrePolynomial
      • PieceWiseLinear
      • Rukia
      • RukiaBitMask
      • ScaledEmpirical
    • mangadap.proc.sasuke module
      • Sasuke
      • SasukeFitDataTable
      • SasukePar
    • mangadap.proc.spatialbinning module
      • GlobalBinning
      • RadialBinning
      • RadialBinningPar
      • SpatialBinning
      • SquareBinning
      • SquareBinningPar
      • VoronoiBinning
      • VoronoiBinningPar
    • mangadap.proc.spatiallybinnedspectra module
      • SpatiallyBinnedSpectra
      • SpatiallyBinnedSpectraBitMask
      • SpatiallyBinnedSpectraDataTable
      • SpatiallyBinnedSpectraDef
    • mangadap.proc.spectralfitting module
      • EmissionLineFit
      • EmissionLineFitDataTable
      • SpectralFitting
      • StellarKinematicsFit
      • StellarKinematicsFitDataTable
    • mangadap.proc.spectralindices module
      • AbsorptionLineIndices
      • BandheadIndices
      • SpectralIndices
      • SpectralIndicesBitMask
      • SpectralIndicesDataTable
      • SpectralIndicesDef
      • SpectralIndicesDefinitionTable
    • mangadap.proc.spectralstack module
      • SpectralStack
      • SpectralStackPar
    • mangadap.proc.stellarcontinuummodel module
      • StellarContinuumModel
      • StellarContinuumModelBitMask
      • StellarContinuumModelDef
    • mangadap.proc.templatelibrary module
      • Class usage examples
      • TemplateLibrary
      • TemplateLibraryBitMask
      • TemplateLibraryDef
    • mangadap.proc.util module
      • HDUList_mask_wavelengths()
      • flux_to_fnu()
      • get_database_key()
      • growth_lim()
      • inverse()
      • optimal_scale()
      • replace_with_data_from_nearest_coo()
      • sample_growth()
      • select_database()
      • select_proc_method()
  • Module contents
• mangadap.spectra package
  • Submodules
    • mangadap.spectra.manga module
      • MaNGARSS
    • mangadap.spectra.rowstackedspectra module
      • RowStackedSpectra
  • Module contents
• mangadap.survey package
  • Submodules
    • mangadap.survey.dapall module
      • DAPall
    • mangadap.survey.drpcomplete module
      • DRPComplete
    • mangadap.survey.manga_dap module
      • manga_dap()
    • mangadap.survey.rundap module
      • rundap
  • Module contents
• mangadap.util package
  • Submodules
    • mangadap.util.bitmask module
      • Class usage examples
      • BitMask
    • mangadap.util.constants module
      • DAPConstants
    • mangadap.util.covariance module
      • Usage examples
      • Covariance
    • mangadap.util.dapbitmask module
      • DAPBitMask
    • mangadap.util.datatable module
      • DataTable
    • mangadap.util.drpbitmask module
      • DRPFitsBitMask
      • DRPQuality3DBitMask
    • mangadap.util.extinction module
      • AvgLMCExtinctionCoefficients
      • FMExtinctionCoefficients
      • GalacticExtinction
      • LMC2ExtinctionCoefficients
      • default_calzetti_rv()
      • default_ccm_rv()
      • default_fm_rv()
      • reddening_vector_calzetti()
      • reddening_vector_ccm()
      • reddening_vector_fm()
    • mangadap.util.fileio module
      • channel_dictionary()
      • channel_units()
      • compress_file()
      • create_symlink()
      • init_record_array()
      • read_template_spectrum()
      • readfits_1dspec()
      • rec_to_fits_col_dim()
      • rec_to_fits_type()
      • wavelength_vector()
      • writefits_1dspec()
    • mangadap.util.filter module
      • BoxcarFilter
      • boxcar_smooth_vector()
      • build_smoothing_mask()
      • high_pass_filter()
      • interpolate_masked_vector()
      • off_diagonal_identity()
      • smooth_masked_vector()
    • mangadap.util.fitsutil module
      • DAPFitsUtil
    • mangadap.util.geometry module
      • SemiMajorAxisCoo
      • point_inside_polygon()
      • polygon_area()
      • polygon_winding_number()
      • projected_polar()
      • rotate()
    • mangadap.util.lineprofiles module
      • FFTGaussianLSF
      • GaussianLSF
      • GaussianLineProfile
      • IntegratedGaussianLSF
      • NCompLineProfile
    • mangadap.util.log module
      • init_DAP_logging()
      • log_output()
      • module_logging()
      • short_warning()
    • mangadap.util.mapping module
      • _match_map_arrays_integer_pixel_shift()
      • _match_map_arrays_sub_pixel_shift()
      • map_beam_patch()
      • map_center_pixel_offset()
      • map_extent()
      • map_quantity()
      • masked_pixelized_image()
      • match_map_arrays()
      • permute_wcs_axes()
    • mangadap.util.misc module
      • is_number()
      • line_coeff()
    • mangadap.util.modeling module
      • FitChiSquare
      • FitResiduals
      • reject_residuals_1d()
      • scaled_coordinates()
    • mangadap.util.parser module
      • DefaultConfig
      • arginp_to_list()
      • list_to_csl_string()
    • mangadap.util.pixelmask module
      • PixelMask
      • SpectralPixelMask
    • mangadap.util.pkg module
      • all_subclasses()
      • load_object()
    • mangadap.util.resolution module
      • SpectralResolution
      • VariableGaussianKernel
      • convolution_variable_sigma()
      • match_spectral_resolution()
    • mangadap.util.sampling module
      • Resample
      • angstroms_per_pixel()
      • borders_to_centers()
      • centers_to_borders()
      • grid_borders()
      • grid_centers()
      • grid_npix()
      • spectral_coordinate_step()
      • spectrum_velocity_scale()
    • mangadap.util.trace module
      • TraceSet
    • mangadap.util.vander module
      • Legendre1D
      • Vander1D
  • Module contents

Submodules

• mangadap.dapfits module
  • DAPCubeBitMask
    • DAPCubeBitMask.cfg_root
  • DAPMapsBitMask
    • DAPMapsBitMask.cfg_root
  • DAPQualityBitMask
    • DAPQualityBitMask.cfg_root
  • add_snr_metrics_to_header()
  • combine_binid_extensions()
  • confirm_dap_types()
  • construct_cube_file
    • construct_cube_file._get_data_mask()
    • construct_cube_file._get_emission_line_model_mask()
    • construct_cube_file._get_stellar_continuum_mask()
    • construct_cube_file._include_no_model_mask()
    • construct_cube_file._set_no_model()
    • construct_cube_file.binned_data_cube()
    • construct_cube_file.model_cubes()
  • construct_maps_file
    • construct_maps_file._build_binning_mask()
    • construct_maps_file._consolidate_donotuse()
    • construct_maps_file._emission_line_model_mask_to_map_mask()
    • construct_maps_file._emission_line_moment_mask_to_map_mask()
    • construct_maps_file._get_kpc_per_arcsec()
    • construct_maps_file._join_maps()
    • construct_maps_file._spectral_index_mask_to_map_mask()
    • construct_maps_file._stellar_continuum_mask_to_map_mask()
    • construct_maps_file.binned_spectra_maps()
    • construct_maps_file.emission_line_model_maps()
    • construct_maps_file.emission_line_moment_maps()
    • construct_maps_file.reduction_assessment_maps()
    • construct_maps_file.spectral_index_maps()
    • construct_maps_file.stellar_continuum_maps()
  • default_paths()
  • finalize_dap_primary_header()
• mangadap.version module

Module contents