mangadap.util package

Submodules

• mangadap.util.bitmask module
  • Class usage examples
  • BitMask
    • BitMask.nbits
    • BitMask.bits
    • BitMask.descr
    • BitMask.max_value
    • BitMask._fill_sequence()
    • BitMask._init_objs()
    • BitMask._prep_flags()
    • BitMask.consolidate()
    • BitMask.flagged()
    • BitMask.flagged_bits()
    • BitMask.from_header()
    • BitMask.from_ini_file()
    • BitMask.from_par_file()
    • BitMask.info()
    • BitMask.keys()
    • BitMask.minimum_dtype()
    • BitMask.parse_bits_from_hdr()
    • BitMask.prefix
    • BitMask.to_header()
    • BitMask.to_rst_table()
    • BitMask.toggle()
    • BitMask.turn_off()
    • BitMask.turn_on()
    • BitMask.unpack()
• mangadap.util.constants module
  • DAPConstants
    • DAPConstants.rad2arcs
    • DAPConstants.sidereal_year
    • DAPConstants.sig2fwhm
• mangadap.util.covariance module
  • Usage examples
  • Covariance
    • Covariance.cov
    • Covariance.shape
    • Covariance.raw_shape
    • Covariance.dim
    • Covariance.nnz
    • Covariance.input_indx
    • Covariance.inv
    • Covariance.var
    • Covariance.is_correlation
    • Covariance._grab_true_index()
    • Covariance._impose_upper_triangle()
    • Covariance._set_shape()
    • Covariance.apply_new_variance()
    • Covariance.bin_to_spaxel_covariance()
    • Covariance.coordinate_data()
    • Covariance.copy()
    • Covariance.find()
    • Covariance.from_array()
    • Covariance.from_fits()
    • Covariance.from_matrix_multiplication()
    • Covariance.from_samples()
    • Covariance.from_variance()
    • Covariance.full()
    • Covariance.output_hdus()
    • Covariance.revert_correlation()
    • Covariance.show()
    • Covariance.spaxel_to_bin_covariance()
    • Covariance.square_shape()
    • Covariance.to_correlation()
    • Covariance.toarray()
    • Covariance.transpose_raw_shape()
    • Covariance.variance()
    • Covariance.write()
• mangadap.util.dapbitmask module
  • DAPBitMask
    • DAPBitMask.cfg_root
• mangadap.util.datatable module
  • DataTable
    • DataTable.keys
    • DataTable.types
    • DataTable.element_shapes
    • DataTable.descr
    • DataTable.data
    • DataTable._dtype
    • DataTable.append()
    • DataTable.dtype
    • DataTable.init()
    • DataTable.shape
    • DataTable.size
    • DataTable.to_hdu()
    • DataTable.to_rst_table()
• mangadap.util.drpbitmask module
  • DRPFitsBitMask
  • DRPQuality3DBitMask
• mangadap.util.extinction module
  • AvgLMCExtinctionCoefficients
  • FMExtinctionCoefficients
    • FMExtinctionCoefficients.from_Rv()
  • GalacticExtinction
    • GalacticExtinction._deredden_vec()
    • GalacticExtinction._redden_vec()
    • GalacticExtinction.apply()
    • GalacticExtinction.compute()
    • GalacticExtinction.valid_forms()
  • LMC2ExtinctionCoefficients
  • default_calzetti_rv()
  • default_ccm_rv()
  • default_fm_rv()
  • reddening_vector_calzetti()
  • reddening_vector_ccm()
  • reddening_vector_fm()
• mangadap.util.fileio module
  • channel_dictionary()
  • channel_units()
  • compress_file()
  • create_symlink()
  • init_record_array()
  • read_template_spectrum()
  • readfits_1dspec()
  • rec_to_fits_col_dim()
  • rec_to_fits_type()
  • wavelength_vector()
  • writefits_1dspec()
• mangadap.util.filter module
  • BoxcarFilter
    • BoxcarFilter._apply()
    • BoxcarFilter._assign_par()
    • BoxcarFilter._check_par()
    • BoxcarFilter._interpolate()
    • BoxcarFilter._reduce_indices()
    • BoxcarFilter.mask
    • BoxcarFilter.smooth()
  • boxcar_smooth_vector()
  • build_smoothing_mask()
  • high_pass_filter()
  • interpolate_masked_vector()
  • off_diagonal_identity()
  • smooth_masked_vector()
• mangadap.util.fitsutil module
  • DAPFitsUtil
    • DAPFitsUtil._mask_data_type()
    • DAPFitsUtil.add_channel_names()
    • DAPFitsUtil.build_cube_header()
    • DAPFitsUtil.build_map_header()
    • DAPFitsUtil.clean_cube_header()
    • DAPFitsUtil.clean_dap_primary_header()
    • DAPFitsUtil.clean_map_header()
    • DAPFitsUtil.copy_to_array()
    • DAPFitsUtil.copy_to_masked_array()
    • DAPFitsUtil.downselect_bins()
    • DAPFitsUtil.empty_hdus()
    • DAPFitsUtil.finalize_dap_header()
    • DAPFitsUtil.get_spatial_shape()
    • DAPFitsUtil.initialize_dap_primary_header()
    • DAPFitsUtil.list_of_image_hdus()
    • DAPFitsUtil.marginalize_mask()
    • DAPFitsUtil.match_image_naxis()
    • DAPFitsUtil.read()
    • DAPFitsUtil.reconstruct_cube()
    • DAPFitsUtil.reconstruct_map()
    • DAPFitsUtil.redshift_to_Newtonian_velocity()
    • DAPFitsUtil.storage_mode_options()
    • DAPFitsUtil.transpose_image_data()
    • DAPFitsUtil.unique_bins()
    • DAPFitsUtil.write()
• mangadap.util.geometry module
  • SemiMajorAxisCoo
    • SemiMajorAxisCoo.rot
    • SemiMajorAxisCoo.pa
    • SemiMajorAxisCoo.ell
    • SemiMajorAxisCoo.A
    • SemiMajorAxisCoo.Alu
    • SemiMajorAxisCoo.Apiv
    • SemiMajorAxisCoo.B
    • SemiMajorAxisCoo.C
    • SemiMajorAxisCoo.Clu
    • SemiMajorAxisCoo.Cpiv
    • SemiMajorAxisCoo.D
    • SemiMajorAxisCoo._calculate_cartesian()
    • SemiMajorAxisCoo._calculate_polar()
    • SemiMajorAxisCoo._defined()
    • SemiMajorAxisCoo._setA()
    • SemiMajorAxisCoo._setB()
    • SemiMajorAxisCoo._setC()
    • SemiMajorAxisCoo._setD()
    • SemiMajorAxisCoo.cartesian()
    • SemiMajorAxisCoo.cartesian_invert()
    • SemiMajorAxisCoo.coo()
    • SemiMajorAxisCoo.polar()
    • SemiMajorAxisCoo.polar_invert()
    • SemiMajorAxisCoo.solve()
    • SemiMajorAxisCoo.solve_inverse()
  • point_inside_polygon()
  • polygon_area()
  • polygon_winding_number()
  • projected_polar()
  • rotate()
• mangadap.util.lineprofiles module
  • FFTGaussianLSF
    • FFTGaussianLSF.p
    • FFTGaussianLSF.dx
    • FFTGaussianLSF.pixel
    • FFTGaussianLSF.sample()
  • GaussianLSF
    • GaussianLSF.p
    • GaussianLSF.npar()
    • GaussianLSF.parameters_from_moments()
    • GaussianLSF.sample()
    • GaussianLSF.set_par()
  • GaussianLineProfile
    • GaussianLineProfile._abc_impl
    • GaussianLineProfile._fix_inputs()
    • GaussianLineProfile._is_dynamic
    • GaussianLineProfile._parameters_
    • GaussianLineProfile.evaluate()
    • GaussianLineProfile.fit_deriv()
    • GaussianLineProfile.fix_flux()
    • GaussianLineProfile.fix_mean()
    • GaussianLineProfile.fix_stddev()
    • GaussianLineProfile.flux()
    • GaussianLineProfile.flux_err()
    • GaussianLineProfile.inputs
    • GaussianLineProfile.integral()
    • GaussianLineProfile.mean
    • GaussianLineProfile.mean_indx()
    • GaussianLineProfile.moment()
    • GaussianLineProfile.moment_err()
    • GaussianLineProfile.outputs
    • GaussianLineProfile.param_names
    • GaussianLineProfile.scale_flux()
    • GaussianLineProfile.scale_stddev()
    • GaussianLineProfile.shift_mean()
    • GaussianLineProfile.sigma
    • GaussianLineProfile.zmom
  • IntegratedGaussianLSF
    • IntegratedGaussianLSF.p
    • IntegratedGaussianLSF.dx
    • IntegratedGaussianLSF.sample()
  • NCompLineProfile
    • NCompLineProfile._mom1_integrand()
    • NCompLineProfile._mom2_integrand()
    • NCompLineProfile._quick_sample()
    • NCompLineProfile.assign_err()
    • NCompLineProfile.assign_par()
    • NCompLineProfile.fix_flux()
    • NCompLineProfile.fix_mean()
    • NCompLineProfile.fix_stddev()
    • NCompLineProfile.flux()
    • NCompLineProfile.flux_err()
    • NCompLineProfile.mean_indx()
    • NCompLineProfile.moment()
    • NCompLineProfile.moment_err()
    • NCompLineProfile.sample()
    • NCompLineProfile.scale_flux()
    • NCompLineProfile.scale_stddev()
    • NCompLineProfile.set_flux()
    • NCompLineProfile.set_mean()
    • NCompLineProfile.set_stddev()
    • NCompLineProfile.shift_mean()
• mangadap.util.log module
  • init_DAP_logging()
  • log_output()
  • module_logging()
  • short_warning()
• mangadap.util.mapping module
  • _match_map_arrays_integer_pixel_shift()
  • _match_map_arrays_sub_pixel_shift()
  • map_beam_patch()
  • map_center_pixel_offset()
  • map_extent()
  • map_quantity()
  • masked_pixelized_image()
  • match_map_arrays()
  • permute_wcs_axes()
• mangadap.util.misc module
  • is_number()
  • line_coeff()
• mangadap.util.modeling module
  • FitChiSquare
  • FitResiduals
  • reject_residuals_1d()
  • scaled_coordinates()
• mangadap.util.parser module
  • DefaultConfig
    • DefaultConfig.all_required()
    • DefaultConfig.get()
    • DefaultConfig.getbool()
    • DefaultConfig.getfloat()
    • DefaultConfig.getint()
    • DefaultConfig.getlist()
    • DefaultConfig.keyword_specified()
    • DefaultConfig.read()
  • arginp_to_list()
  • list_to_csl_string()
• mangadap.util.pixelmask module
  • PixelMask
    • PixelMask.shape
    • PixelMask._empty_mask()
    • PixelMask._mask_coordinate_ranges()
    • PixelMask._set_shape()
  • SpectralPixelMask
    • SpectralPixelMask.artdb
    • SpectralPixelMask.emldb
    • SpectralPixelMask.waverange
    • SpectralPixelMask._artifact_mask()
    • SpectralPixelMask._check_eml_kin_argument()
    • SpectralPixelMask._emission_line_mask()
    • SpectralPixelMask._get_emission_line_bands()
    • SpectralPixelMask._waverange_mask()
    • SpectralPixelMask.bits()
    • SpectralPixelMask.boolean()
• mangadap.util.pkg module
  • all_subclasses()
  • load_object()
• mangadap.util.resolution module
  • SpectralResolution
    • SpectralResolution.interpolator
    • SpectralResolution.log10
    • SpectralResolution.c
    • SpectralResolution.dv
    • SpectralResolution.dw
    • SpectralResolution.min_sig
    • SpectralResolution.sig_pd
    • SpectralResolution.sig_mask
    • SpectralResolution.sig_vo
    • SpectralResolution.GaussianKernelDifference()
    • SpectralResolution._convert_pd2vd()
    • SpectralResolution._convert_vd2pd()
    • SpectralResolution._finalize_GaussianKernelDifference()
    • SpectralResolution.adjusted_resolution()
    • SpectralResolution.instrumental_dispersion()
    • SpectralResolution.match()
    • SpectralResolution.offset_GaussianKernelDifference()
    • SpectralResolution.sres()
    • SpectralResolution.wave()
  • VariableGaussianKernel
    • VariableGaussianKernel.sigma
    • VariableGaussianKernel.p
    • VariableGaussianKernel.m
    • VariableGaussianKernel.kernel
    • VariableGaussianKernel._check_shape()
    • VariableGaussianKernel._create_a()
    • VariableGaussianKernel.convolve()
  • convolution_variable_sigma()
  • match_spectral_resolution()
• mangadap.util.sampling module
  • Resample
    • Resample.x
    • Resample.xborders
    • Resample.y
    • Resample.e
    • Resample.m
    • Resample.outx
    • Resample.outborders
    • Resample.outy
    • Resample.oute
    • Resample.outf
    • Resample.covar
    • Resample._coordinate_grid()
    • Resample._resample_linear()
    • Resample._resample_step()
    • Resample._resample_step_matrix()
  • angstroms_per_pixel()
  • borders_to_centers()
  • centers_to_borders()
  • grid_borders()
  • grid_centers()
  • grid_npix()
  • spectral_coordinate_step()
  • spectrum_velocity_scale()
• mangadap.util.trace module
  • TraceSet
    • TraceSet._get_val_and_vander()
    • TraceSet._normalized_coordinates()
    • TraceSet.allowed_functions()
    • TraceSet.from_fits_table()
    • TraceSet.sample()
• mangadap.util.vander module
  • Legendre1D
  • Vander1D
    • Vander1D.x
    • Vander1D.v
    • Vander1D.rcond
    • Vander1D._single_fit()
    • Vander1D.fit()
    • Vander1D.model()
    • Vander1D.order
    • Vander1D.shape
    • Vander1D.size

Module contents